representation rep_method: Change the default.list : Print information about molecules.structure_file_type structure_file : Load a new molecule from given file(s).MN is one of the following: all, top, active, inactive, displayed, on, off,įixed, free, or one of the unique integer ID codes assigned to Molecule_number is a string describing which molecules areĪffected by the command. Load, modify, or delete a molecule in VMD. menu_name loc: Print the location of a menu.console: Log commands to the VMD text console.The logįile may be played back later by using the This will create a logįile with commands for all the actions taking during the session. Turn on/off logging a VMD session to a log file. light_number rot angle: Rotate a light (at infinity) angle degrees about a given axis.Hide the line indicating the position of a light source. There areĭisplay a line indicating the position of a light source. %s in the command string will be replaced by theĬontrol the light sources used to illuminate graphical objects. The data will be written to a file, and the specified command will be run to : Show a graph of a label from the given category. list category: list all labels in the given.farclip value: Add to or set far clipping plane position.Īdd a label involving the N atoms to the given category.nearclip value: Add to or set near clipping plane position.depthcue : Turn depth cueing on or off.antialias : Turn antialiasing on or off.distance value: Set the screen distance to value.height value: Set the screen height to value.focallength value: Set the focal length to value.eyesep value: Set the eye separation to value.If VMD was compiled without the debugging option. Turn on/off printing of debugging messages. change color r g b: Set given (3-valued) property of color to r g b.change color value: Set given (scalar) property of color to value.change color othercolor: Set given property of color to match othercolor.change color: Reset given property of color to default value.scale max x: Set maximum of color scale to x, in the range 0.scale min x: Set minimum of color scale to x, in the range 0.scale midpoint x: Set midpoint of color scale to x, in the range 0.scale method : Set type of scale to use for coloring objects by values.category name color: Set color of object specified by category and name to color.readdel filename : Read data for molecule_number from filename, beginning with frame nb, ending with frame ne, with a stride of ns+1, overwriting existing data.Ĭhange the color assigned to molecules, or edit the colormap.delete : Delete data for molecule_number, beginning with frame nb, ending with frame ne, with a stride of ns+1.write filename : Write data from molecule_number to filename, beginning with frame nb, ending with frame ne, with a stride of ns+1.read filename : Read data for molecule_number from filename, beginning with frame nb, ending with frame ne, with a stride of ns+1.style rock: Set to play animation foward and back continuously.style loop: Set to loop through animation continuously.style once: Set to play animation once.delete all: Delete all frames from memory.Words which complete the command are shown in the sublist. Specify a number of seconds to wait before reading another command. Translate the objects in the current scene.Īdd user-customized commands to the graphics display pop-up menu. ![]() Position a checkerboard stage on the screen. Rotate the current scene around a given axis by a certain angle. Rotate the current scene continually at a specified rate. Output the currently displayed image (scene) to a file. Set up VMD to connect to or start a remote simulation program ( optional). Start executing text commands from a specified file. Load, modify, or delete a molecule in VMD.Ĭhange the current state (mode) of the mouse. Log commands to a text file or the VMD console.Ĭontrol or query the on-screen GUI menu forms. Turn on/off labels for particular atoms, bonds, angles, or dihedral angles.Ĭontrol the light sources used to illuminate graphical objects. Position a set of XYZ axes on the screen.Ĭhange the color assigned to molecules, or edit the colormap.Ĭhange various aspects of the graphical display window.ĭisplay this help file with an HTML viewer. Play/Pause/Rewind a molecular trajectory. Items marked as ( optional) may not be available in the current version of VMD. VMD understands commands which start with the following words click on a command for a more complete synopsis. Please send bug reports, comments, or suggestions page contains quick help on the following topics: For the latest news about VMD, please see theįor a complete description on how to install, use, or modify VMD, please see
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